Human H5N1 Indonesian Sequences Available at Los Alamos
Recombinomics Commentary
August 4, 2006
Yesterday Indonesia pledged to release the H5N1 human sequence sequestered in the WHO private database. Today the password protection on the sequences was removed and the sequences became publicly available. Analysis of the sequences can help determine origins and predict targets for vaccines. Orgins can be traced by monitoring informative polymorphisms.
Below is one such series, showing the similarity between the various human isolates and relationship to other H5N1 bird flu sequences at Genbank or Los Alamos.
ISDN136817 A/Feline/Indonesia/CDC1/2006 2006 H5N1
ISDN136812 A/Indonesia/CDC326/2006 2006 H5N1
ISDN136810 A/Indonesia/CDC326N/2006 2006 H5N1
ISDN136811 A/Indonesia/CDC326N2/2006 2006 H5N1
ISDN136813 A/Indonesia/CDC326T/2006 2006 H5N1
ISDN136814 A/Indonesia/CDC326T/2006 2006 H5N1
ISDN136815 A/Indonesia/CDC329/2006 2006 H5N1
ISDN136816 A/Indonesia/CDC357/2006 2006 H5N1
ISDN136908 A/Indonesia/CDC370/2006 2006 H5N1
ISDN136909 A/Indonesia/CDC370E/2006 2006 H5N1
ISDN137412 A/Indonesia/CDC370P/2006 2006 H5N1
ISDN137413 A/Indonesia/CDC370T/2006 2006 H5N1
ISDN181365 A/Indonesia/CDC523/2006 2006 H5N1
ISDN183297 A/Indonesia/CDC523E/2006 2006 H5N1
ISDN183305 A/Indonesia/CDC523T/2006 2006 H5N1
ISDN183313 A/Indonesia/CDC582/2006 2006 H5N1
ISDN140835 A/Indonesia/CDC594/06 2006 H5N1
ISDN140843 A/Indonesia/CDC595/06 2006 H5N1
ISDN140851 A/Indonesia/CDC596/06 2006 H5N1
ISDN140859 A/Indonesia/CDC597/06 2006 H5N1
ISDN140866 A/Indonesia/CDC599/06 2006 H5N1
ISDN183782 A/Indonesia/CDC599N/2006 2006 H5N1
ISDN183698 A/Indonesia/CDC610/2006 2006 H5N1
ISDN183706 A/Indonesia/CDC623/2006 2006 H5N1
ISDN183714 A/Indonesia/CDC623E/2006 2006 H5N1
ISDN183722 A/Indonesia/CDC624/2006 2006 H5N1
ISDN183730 A/Indonesia/CDC624E/2006 2006 H5N1
ISDN183738 A/Indonesia/CDC625/2006 2006 H5N1
ISDN183770 A/Indonesia/CDC625L/2006 2006 H5N1
ISDN183746 A/Indonesia/CDC634/2006 2006 H5N1
ISDN183754 A/Indonesia/CDC634P/2006 2006 H5N1
ISDN183762 A/Indonesia/CDC634T/2006 2006 H5N1
DQ497667 A/chicken/Dairi/BPPVI/2005 2005 H5N1
DQ497668 A/chicken/Deli Serdang/BPPVI/2005 2005 H5N1
DQ497651 A/chicken/Gunung Kidal/BBVW/2005 2005 H5N1
DQ497652 A/chicken/Kulon Progo/BBVW/2005 2005 H5N1
DQ497643 A/chicken/Magetan/BBVW/2005 2005 H5N1
DQ497648 A/chicken/Purworejo/BBVW/2005 2005 H5N1
DQ320928 A/chicken/Salatiga/BBVet-I/2005 2005 H5N1
DQ497665 A/chicken/Simalanggang/BPPVI/2005 2005 H5N1
DQ497669 A/chicken/Tarutung/BPPVI/2005 2005 H5N1
DQ497666 A/chicken/Tebing Tinggi/BPPVI/2005 2005 H5N1
DQ320933 A/chicken/Wajo/BBVM/2005 2005 H5N1
DQ497659 A/duck/Parepare/BBVM/2005 2005 H5N1
ISDN125873 A/Indonesia/5/05 2005 H5N1
ISDN136806 A/Indonesia/CDC287E/2005 2005 H5N1
ISDN136807 A/Indonesia/CDC287T/2005 2005 H5N1
ISDN136808 A/Indonesia/CDC292N/2005 2005 H5N1
ISDN136809 A/Indonesia/CDC292T/2005 2005 H5N1
DQ497662 A/chicken/Kupang-1-NTT/BPPV6/2004 2004 H5N1
DQ497663 A/chicken/Pangkalpinang/BPPV3/2004 2004 H5N1
DQ320930 A/chicken/Yogjakarta/BBVet-IX/2004 2004 H5N1
AY651372 A/Ck/YN/115/2004 2004 H5N1
DQ497707 A/goose/Vietnam/264/2004 2004 H5N1
DQ497647 A/quail/Boyolali/BPPV4/2004 2004 H5N1
DQ497649 A/quail/Yogjakarta/BBVet-IX/2004 2004 H5N1
AY651369 A/Dk/YN/6255/2003 2003 H5N1
AY651351 A/Ck/Hong Kong/3169.1/2002 2002 H5N1
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